Search This Blog

Showing posts with label BIO 420 - Microbiology. Show all posts
Showing posts with label BIO 420 - Microbiology. Show all posts

Tuesday, December 18, 2018

Microbiology Exam 2 Essay - HIV Questions

a)  Signs and Symptoms of the disease – Lecture 7, Slides 13, 14, 15, 16 – Describe four stages of HIV infection, including: Duration, Signs and Symptoms, Immune response
·      First – Incubation period (2 – 4 wks): NO S/S; NO immune response
·      Second – Acute HIV infection (≤ 1 month): S/S fever, swollen lymph nodes, pharyngitis, thrush, weight loss, drop in T helper-cells (CD4) from 1200 cells/µL to 800 cells/µL; Immune response HIV antibodies produced → virus opsonized, infected T cells destroyed → macrophages newly infected b/c virus avoids formation of phagolysosome
·      Third – Latency stage (2 wks – 20 yrs) S/S mild or non-existant; Immune response HIV eliminated from blood stream, hiding in macrophages + increasing through budding → new virions infect T helper-cells → infected T helper-cells killed = drop in T cell count
·      Forth – AIDS (~1 month) T helper-cell count < 200 cells/µL S/S Depends on types of opportunistic infections examples Pneumocystis pneumonia, Candidiasis, Kaposi’s sarcoma; Immune response immunodeficiency

b)  Etiological agent of the disease – Lecture 7, Slides 17, 18, 19, 20 – Describe the following: Structure of the virus & Functions of two major proteins of viral envelop; Functionsof three viral enzymes included in capsid. Replication of HIV in host cell
·      Enveloped retrovirus, capsid w/ 2x ss(+) RNA genome + 3 viral enzymes
·      Two major viral envelope proteins: gp 120 (receptor/docking protein – CD4 + CXCR4 coreceptor) and gp 41 (transmembrane protein)
·      3 viral enzymes: reverse transcriptase (ssRNA → dsDNA), integrase (viral dsDNA integrated into host cell chromosome), protease (cleave new non-active viral proteins → active)
·      HIV replication: (1) Attachment and entry – gp120 docking protein attaches to host TH cells through CD4 and CXCR4 or CCR5(macrophages) → Viral envelope fuses w/ host cell membrane →  virus uncoats releasing genetic material →  (2) Provirus – ssRNA → dsDNA w/ reverse transcriptase → new viral DNA integrated into host cell’s chromosomes w/ integrase → (3) Replication of virus – Viral genes expressed and producing new virions → HIV release via budding

c)  Pathogenesis of the disease – Lecture7,Slides19,21,22 – Describe: Damage done by HIV to the host; Why macrophages become HIV reservoir in infected person; HIV diagnostics
·      HIV infection kills off T helper-cells b/c body’s NK cells and compliment system attacks infected TH cells
·      Macrophages are persistent reservoir for HIV: Anti-HIV antibodies opsonize HIV for macrophages to phagocytize them → HIV inhibits fusion of phagosome and lysosome → virus escapes phagosome and undergoes viral replication cycle → provirus
·      TH cells reduced over time, < 200 cells/µL (AIDS) = immune system fails to mount immune response to infection.
·      Diagnostic: Genetic analysis (PCR reaction), Serological analysis (Western blot – HIV antigens present in serum only in acute and AIDS, NOT latent stage) OR (ELISA – Search for anti-HIV antibodies)

d)  Epidemiology of the disease Lecture 7, Slides 23, 24, 25, 26; 27 – Origin, Reservoir, Routes of transmission of HIV infection. US statistical data for 2011
·      Originated in chimpanzees → transferred through hunting primates for bush meat (~late 19th or early 20th century) → Until 1950s endemic to certain areas on Africa → Oldest known case of AIDS in 1959 Congo → development of modern transport + unsafe sex spreads HIV → 1976 1st Westerner (Norwegian sailor) dies from AIDS
·      Reservoir:  Human blood, breast milk, semen (can survive for up to 6 hrs)
·      Transmission: Sexual contact (Homo + hetero), injected drug use, blood transfusion, inborn, transplant, breast milk
·      US stats 2011 40,000+ cases of new HIV infections reported, 64% homo, 28% hetero, 8% injected, other route < 1%. Most new cases from 20-35 age range. NY 4th in # of new cases (~5000). African Americans + White have same cumulative # of HIV cases.

e)  Prevention and Treatment of the disease – Lecture 7, Slides 28, 29, 30 – Prevention of HIV infection; Treatment of HIV; Cost and availability of retroviral drugs to HIV-infected world-wide
·      Prevention: Use of condoms (reduce trauma to mucous membrane), sterile needles, healthcare PPE, Antiretroviral therapy upon accidental exposure, mandatory blood screening.
NO vaccines yet. All are in clinical trails

·      Treatment: Reverse transcriptase inhibitors (didanosone, nevirapine, delavirdine), integrase inhibitors, protease inhibitors (Indinavir, ritonavir)


Thursday, December 13, 2018

Microbiology Lecture 12 Review: Chapter 26, 27.4-6

Lecture Review

Chapter 26 - Bacterial and Viral Infections of the Nervous System


1.    [26-01] Bacterial meningitis – Compare pneumococcal, meningococcal and Hib meningitis by describing their etiological agents – Lecture 12, Slide 4 –
Pneumococcal meningitis is caused by Streptococcus pneumoniae that is Gram-positive, aerotolerant, salt-sensitive, catalase-negative diplococci growing in chains. It can produce the following virulence factors: immunogenic capsule, IgA protease, pneumolysin (cholesterol-depended cytolysin), beta-lactamase. It causes infections only if ciliary escalator non-functional.

Meningococcal meningitis
is caused by Neisseria meningitidis that is fastidious Gram-negative, obligate aerobic, catalase-positive diplococci. It can produce the following virulence factors: capsule, antigenic variations, endotoxins.

Hib meningitis is caused by Haemophilus influenzae that is fastidious Gram-negative, facultative anaerobe, catalase-positive coccobacilli. It can produce the following virulence factors:  capsule, beta-lactamase, endotoxins.

***All three bacteria can be carried asymptomatically in nasal cavities of healthy individuals.

2.    [26-02] Bacterial meningitis – Compare pneumococcal, meningococcal and Hib meningitis by describing their pathogenesis – Lecture 12, Slide 5 –
All three pathogens enter the host’s bloodstream via mucous membrane by directed uptake mechanism, which delivers them to the meninges. The presence of microbes in meninges is resulting in inflammation reaction and meningitis leading to fluids accumulating in infected area and brain swelling. Haemophilus influenzae and Neisseria meningitidis are also producing endotoxins. The appearance of endotoxin in blood is resulting in wide-spread vasodilation of blood vessels, blood pressure drop & disseminated intravascular coagulation (blood clotting).
Clots formed in capillaries block local blood flow, leading to gangrene (tissue necrosis).

Proteases produced by Neisseria meningitidis further contribute to tissue damage. Early diagnostics is important as fatality risk rises to 15% within 12 hours of start of Neisseria meningitidis infection. For diagnostics purposes, lumber puncture is performed to collect cerebrospinal fluid that is tested by PCR, Gram stain, bacterial culture and immunological testing in latex agglutination test.

3.    [26-03] Bacterial meningitis – Compare pneumococcal, meningococcal and Hib meningitis by describing their epidemiology – Lecture 12, Slide 6 –
All three bacterial meningitis: All bacteria (S. pneumoniae, N. meningitidis, H. influenzae) can be carried asymptomatically in nasal cavities of healthy individuals. All 3 meningitis are notifiable disease transmitted via respiratory route involving respiratory droplets.

Pneumococcal meningitis is communicable disease that makes up to 50% of bacterial meningitis cases reported in the US. Mortality rate is less than 10%.

Meningococcal meningitis is contagious disease that has high incidence in sub-Saharan Africa but very low one in the US. Mortality rate reaches 15% in the first 12 hours and can reach 80% if left untreated.

Hib meningitis is contagious disease that accounted for 45% of all meningitis cases before introduction of vaccine. Now it accounts for 5% of all meningitis cases. Mortality rate is about 6%, if disease treated, and up to 90%, if disease untreated. 30% of children will suffer from lasting neurological damage. 

4.    [26-04] Bacterial meningitis – Compare pneumococcal, meningococcal and Hib meningitis by describing their prevention and treatment – Lecture 12, Slide 8 Pneumococcal meningitis: It is prevented in children by conjugated vaccines PCV-7 and in adults by conjugated vaccine PCV-13 or by polysaccharide vaccine PPSV.
Disease is treated by penicillin, macrolides (Azithromycin, Clarithromycin), tetracycline or intravenous fluoroquinolones (Ciprofloxacin).

Meningococcal meningitis:
It is prevented by conjugated MCV-4 and polysaccharide MPSV-4 vaccines. Exposed are prescribed antibiotics as prophylaxis. Disease is treated by Penicillin G, Cephalosporin. In severe cases, 3rd generation cephalosporins (Cefotaxime, Ceftriaxone) are used.

Hib meningitis: Vaccine is available only against H. influenzae serotype B (Hib vaccine) that is common in the US and Europe. It is on immunization schedule in the US. Disease is treated by antibiotics cocktail that includes ampicillin, cephalosporin, intravenous fluoroquinolones (Ciprofloxacin). In severe cases, 3rd generation cephalosporins (Cefotaxime, Ceftriaxone) are used.  

5.    [26-05] Botulism – Describe signs and symptoms. Describe etiological agent – Lecture 12, Slide 13 –
Signs & symptoms: Incubation 12-36 hrs after ingestion of toxin.
In Infants: poor feeding, weak cry, constipation → flaccid paralysis (ex: ptosis, expressionless face, and difficulty swallowing), mild lethargy, hypotonia, failure to thrive, respiratory insufficiency → death.
In adults: Dizziness, dry mouth, blurred vision → flaccid paralysis (impaired eye movement, ptosis, problems chewing + swallowing, difficulties talking, loss of facial expression) → muscle weakness of shoulders → muscle weakness of forearms → muscle weakness of feet → IF severe enough respiratory failure, coma, and death.

Etiological agent: Clostridium botulinum – Gram-positive bacteria, anaerobic, spore forming, bacillus of Firmicutes phylum (low GC content in DNA), produces botulinum toxin.

[26-06] Botulism – Describe pathogenesis. Describe epidemiology – Lecture 12, Slide 14 –
Pathogenesis: Toxin produced during germination of endospores of C. botulinum (produced in warm, protein rich anaerobic environment, toxin different serotypes depending on strain) → toxin blocks acetylcholine release within neuron synapses → disrupts signal transduction between neurons → flaccid paralysis

Epidemiology: Non-communicable, reportable disease.
Reservoir – Soil and dust
Transmission
– 3 types of botulism:
Food botulism (toxin ingested by food)
Infant botulism (toxin produced in intestines during germination of ingested endospores)
Wound botulism (Botulinum toxin produced during germination of endospores in deep wound).
Number of cases reported – US 100 cases/yr, majority of cases in infants < 6 months.
Mortality rate – Case-fatality rate of hospitalized patients is less than 1%.


6.    [26-07] Botulism – Describe prevention and treatment – Lecture 12, Slide 16 –
Prevention:
Infant botulism = NO raw honey for babies < 1yr; NO renovations until child is > 1 year old.
Wound botulism = Prompt wound clearing, seek immediate medical care for infected wound.
Foodborne botulism = High acidity, high sugar content, nitrites prevent bacterial growth in food. Commercially canned food undergo Botulinum cook @ 121ºC at 15psi for 3mins.
Botulinum toxin is heat-sensitive → can be destroyed by thorough cooking.
BUT Clostridium botulinum endospores are not killed in boiling water.

Treatment: 1) Antitoxin treatment – Botulism immune globin intravenous-human (BIG-IV) or BabyBIG given at first suspicion of botulism w/o delay.
2) Antimicrobial treatment – Antibiotics (tetracycline, erythromycin) kill bacteria, not endospores or toxins.
3) Severe cases – It may require putting patient on ventilator and provide intensive medical & nursing care.

7.    [26-08] Rabies – Describe signs and symptoms Lecture 12, Slides 22 –
Signs & Symptoms: Incubation 2-12 weeks after person bitten by infected animal (tingling/twitching felt at site of animal bite) → slight/partial paralysis of muscles of mouth and pharynx (inability to speak or swallow, saliva dripping, hydrophobia) → anxiety, insomnia, confusion, agitation, paranoia → hallucination that progress to delirium → death 2-10 days after symptoms appear.

Etiological agent: Rabies virus – RNA enveloped virus w/ characteristic bullet appearance, neurotrophic = infects nervous system and kills off neurons.

8.    [26-09] Rabies – Describe pathogenesis – Lecture 12, Slides 23 –
Pathogenesis: Virus in saliva enters through animal bite and replicates in skeletal muscle in epidermal cells → enters and travels along peripheral nerves to CNS → enters spinal cord → reaches brain causing encephalitis (Once virus has entered neurons, NO longer accessible to immune system) → virus appears in salivary glands & other organs of victim.

9.    [26-10] Rabies – Describe epidemiology – Lecture 12, Slide 23-24 –
Epidemiology: Highly Contagious, Notifiable zoonosis
Reservoir: Bats (carry virus asymptomatically), infected wild animals, infected dogs, cats.
Transmission
– Bites of infected animal or exposure to saliva.
Number of cases reported – Over 4000 cases in animals/yr; only 1 to 3 cases in humans/yr
Mortality rate – Once symptoms show the patient is dead.

10. [26-11] Rabies – Describe prevention and treatment – Lecture 12, Slide 25 –
Prevention: Vaccine available, BUT only for individuals w/ high exposure risk. IF person bitten by animal → wound washed, animal tested for virus, if NO animal/(+)rabies = immediate post-exposure prophylaxis (vaccine + immune globulin)

Treatment: Once signs & symptoms set in → NO treatment.

Chapter 27.4-6 Bacterial STDs

11. [27-01] Sexually transmitted diseases: scope of the problem – Lecture 12, Slide 27 – The USA has the highest reported incidence of STD among developed countries. About 85% of students have had sexual intercourse. About third of them have had six or more sexual partners. About two third of sexually active students report that they or their partners rarely or never use condoms. Routes of transmission of STD: Sexual contact, Bodily fluid discharges, Fomites (some diseases), Childbirth, Breast feeding.

New cases reported in USA in 2014: Chlamydia – almost 1.5 million cases, Gonorrhea – over 350,000 cases, Primary and secondary syphilis – almost 20,000 cases. New cases reported in state of New York in 2014: Chlamydia – almost 100,000 cases, Gonorrhea – almost 21,000 cases, Primary and secondary syphilis – over 1,700 cases.

12. [27-02] Gonorrhea – Describe signs and symptoms, and etiological agents – Lecture 12, Slides 28 –
Signs & Symptoms: Incubation 2-5 days. Asymptomatic infection possible (60% women, 20% men). Symptomatic: pain on urination (dysuria), pus-containing discharge, ophthalmia neonatorum in newborn (may lead to blindness).

Etiological agent: Neisseria gonorrhoeae –
Gram negative, facultative anaerobic, fastidious, diplococci of ß-proteobacteria.

Virulence factor: Type IV pili used for attachment, gliding along surface, DNA exchange. IgA protease. Lipooligosaccharides (LOS) = inhibit phagocytosis (prevents phagolysosome formation) and provides resistance to host antimicrobial peptides and compliment system.
Avoids opsonization – Inhibition of C3 convertase, antibodies avoided (binding host sialic acid, rapid change of surface antigens, prevention of helper T cell activation)


[27-03] Gonorrhea – Describe pathogenesis. Describe epidemiology – Lecture 12, Slides 29, 30 –
Pathogenesis: Bacteria enters host → attaches to non-ciliated mucosal cells (urethra, uterine cervix, mouth, pharynx, rectum, or conjunctiva) → some bacteria colonize surface, others direct host cells to engulf them → Intracellular bacteria grow inside epithelial cells/released on other side of mucosal barrier → continuous contact with bacteria causes inflammation in human tissues that may cause enough damage to result in infertility.

Epidemiology:

Reservoir: Humans only.
Transmission
– Intimate sexual contact, 60% of women and 20% of men asymptomatic.
Number of cases reported – US ≤ 700,000 new infections/yr
Mortality rate – 1% for life threatening complications

13. [27-04] Gonorrhea – Describe prevention and treatment – Lecture 12, Slides 30 –
Prevention: Abstinence or monogamous relationship. Use of condoms reduces risk of STD (NOT 100% guarantee). Ophthalmia neonatorum in newborn is preventable by instilling neomycin solution in eyes 1-hour post delivery.

Treatment: Antibiotics (tetracycline or other antibacterials), problem of increasing resistance.